Please run the scenery, check Madeira at night for the lights, close the sim. Then post as attachment SODE log from: C:\ProgramData\12bPilot\SODE\log.
In the meantime I recommend checking these directories for files:
C:\ProgramData\12bPilot\SODE\SimObjects for MKSTUDIOS_MADEIRA folder
C:\ProgramData\12bPilot\SODE\xml for MKSTUDIOS_MADEIRA .xml
If present
Download last sode 1.4.2 from http://sode.12bpilot.ch/?page_id=9
Run the file and use repai